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Introduction:

  • Prerequisites
    • Quick Installation
    • Dev Installation
    • Requirements
  • Design
    • Models
    • Components
      • Translation
      • Validation

Modules:

  • Structure
    • Topology
    • Molecule
      • Description
      • API
  • Force fields
    • ForceField
      • Description
      • API
    • NonBonded
      • Description
      • API
    • Bonds
      • Description
      • API
    • Angles
      • Description
      • API
    • Dihedrals
      • Description
      • API
    • DihedralsImproper
      • Description
      • API
  • Collections
    • Trajectory
      • Description
      • API

Tutorials:

  • Structure
    • Overview & Instantiation
    • Topological data
    • I/O operations
      • File operations
      • Data conversion
    • Coarse-graining
    • Validation
  • Force fields
    • Instantiation
      • Functional form
      • Assigned parameters
    • I/O operations
      • File operations
      • Data conversion
    • Coarse-graining
    • Validation
  • Trajectory
  • Debugging
MMElemental
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