Index

A

Angles (class in mmelemental.models.forcefield.bonded.angles)

B

Bonds (class in mmelemental.models.forcefield.bonded.bonds)

D

Dihedrals (class in mmelemental.models.forcefield.bonded.dihedrals)

DihedralsImproper (class in mmelemental.models.forcefield.bonded.dihedrals_improper)

F

ForceField (class in mmelemental.models.forcefield.forcefield) from_data() (mmelemental.models.collect.trajectory.Trajectory class method) (mmelemental.models.forcefield.forcefield.ForceField class method) (mmelemental.models.struct.molecule.Molecule class method)

from_file() (mmelemental.models.collect.trajectory.Trajectory class method) (mmelemental.models.forcefield.forcefield.ForceField class method) (mmelemental.models.struct.molecule.Molecule class method)

G

get_geometry() (mmelemental.models.collect.trajectory.Trajectory method) get_hash() (mmelemental.models.collect.trajectory.Trajectory method) (mmelemental.models.forcefield.forcefield.ForceField method) (mmelemental.models.struct.molecule.Molecule method)

get_molecular_formula() (mmelemental.models.struct.molecule.Molecule method) get_substructs() (mmelemental.models.struct.molecule.Molecule method)

I

is_topology (mmelemental.models.forcefield.forcefield.ForceField property)

M

mmelemental.models.collect.trajectory module mmelemental.models.forcefield.bonded.angles module mmelemental.models.forcefield.bonded.bonds module mmelemental.models.forcefield.bonded.dihedrals module mmelemental.models.forcefield.bonded.dihedrals_improper module mmelemental.models.forcefield.forcefield module mmelemental.models.forcefield.nonbonded module

mmelemental.models.struct.molecule module module mmelemental.models.collect.trajectory mmelemental.models.forcefield.bonded.angles mmelemental.models.forcefield.bonded.bonds mmelemental.models.forcefield.bonded.dihedrals mmelemental.models.forcefield.bonded.dihedrals_improper mmelemental.models.forcefield.forcefield mmelemental.models.forcefield.nonbonded mmelemental.models.struct.molecule Molecule (class in mmelemental.models.struct.molecule)

N

NonBonded (class in mmelemental.models.forcefield.nonbonded)

S

show() (mmelemental.models.struct.molecule.Molecule method)

T

to_data() (mmelemental.models.collect.trajectory.Trajectory method) (mmelemental.models.forcefield.forcefield.ForceField method) (mmelemental.models.struct.molecule.Molecule method)

to_file() (mmelemental.models.collect.trajectory.Trajectory method) (mmelemental.models.forcefield.forcefield.ForceField method) (mmelemental.models.struct.molecule.Molecule method) Trajectory (class in mmelemental.models.collect.trajectory)